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That's why you have to rebuild completely the weights of the armour.
This step is exactly the same as the one explained in Add a material.
Once you have all the armour parts imported into Blender: Once you've deleted all those, you'll have in Blender only the parts that made the armour, as shown in picture Imported mesh without skeleton or body parts.
This step is exactly the same as the one explained here: Import into Blender all parts of the 0body.
As Blender has not yet been fully adapted to Skyrim, to be able to import the nif files into it you have to change some properties in Nif Skope. If you cannot find that option it is because you haven't installed Nif Scripts.
Follow the instructions given here: Installation of Blender to install everything you need.
This will surely change in the future months and this tutorial will be updated when required.